New CMPS Publications

• Interactions in the native state of monellin, which play a protective role against aggregation. Szczepankiewicz O, Celia Cabaleiro-Lago C, Tartaglia GG, Vendruscolo M, Hunter T, Hunter GJ, Nilsson H, Thulin E, Linse S. Molecular Biosystems 7:521 – 532 (2011)
• Molecular Determinants of S100B Oligomer Formation  Thulin E, Kesvatera T, Linse S. PLOS ONE  6: e14768  (2011)
• Monte Carlo simulations of protein amyloid formation reveal origin of sigmoidal aggregation kinetics. Linse B, Linse S. Molecular Biosystems 7:2296-2303 (2011) 
• Identification of a high-affinity network of secretagogin-binding proteins involved in vesicle secretion. Bauer MC. O’Connell D, Maj M, Wagner L, Cahill D, Linse S. Molecular Biosystems 7:2196-2204 (2011) 
• The structural role of N-linked glycans in human glypican-1. Svensson G, Hyrenius Wittsten A,  Linse S, Mani K. Biochemistry 50:9377-9387 (2011)
• Structural changes in apolipoproteins bound to nanoparticles. Cukalevski R, Lundqvist M, Oslakovic C, Dahlbäck B, Linse S, Cedervall T. Langmuir 27:14360-14369 (2011)
• Rapid and facile purification of apolipoprotein A-I from human plasma using thermoresponsive nanoparticles. Lundqvist M, Berggård T, Hellstrand E, Lynch I, Dawson KA, Linse S, Cedervall T. Journal of Biomaterials and Nanobiotechnology 2:258-266 (2011)
• Membrane interaction of alfa-synuclein in different aggregation states. Grey M, Linse S, Nilsson H, Brundin P, Sparr E.  Journal of Parkinsons Disease 1:359-371 (2011)
• In vivo protein stabilization based on fragment complementation and a split GFP system Lindman S, Garcia-Hernandez A, Szczepankiewicz O, Frohm B, Linse S. Proc Natl Acad Sci U S A. 107, 19826-31 (2010) 
• pKa values for the unfolded state under native conditions explain the pH dependent stability of PGB1 Lindman S, Bauer MC, Lund M, Diehl C, Mulder FAA, Akke M, Linse S.. Biophys J, 99, 3365-73. (2010)
• Modelling the time evolution of the nanoparticle-protein corona in a body fluid. Dell'Orco D, Lundqvist M, Oslakovic C, Cedervall T, Linse S. PLoS One. 5:e10949 (2010) 
• Chloroplast thylakoids reduce glucose uptake and decrease intestinal macromolecular permeability. Montelius C, Gustafsson K, Weström B, Albertsson PÅ, Emek SC, Rayner M,Erlanson-Albertsson C. Br J Nutr. 106:836-44 (2011)
• Implications of the inability of Listeria monocytogenes EGD-e to grow anaerobically due to a deletion in the class III NrdD ribonucleotide reductase for its use as a model laboratory strain. Ofer A, Kreft J, Logan DT, Cohen G, Borovok I, Aharonowitz Y. 
  J Bacteriol. 193: 2931-40 (2011)
• Small angle X-ray scattering study of a Rex family repressor: conformational response to NADH and NAD+ binding in solution. Wang E, Ikonen TP, Knaapila M, Svergun D, Logan DT, von Wachenfeldt C. J Mol. Biol. 408: 670–683 (2011)
• Pigments Protect the Light Harvesting Proteins of Chloroplast Thylakoid Membranes Against Digestion by Gastrointestinal Proteases.
  Emek SC, Akerlund HE, Clausen M, Ohlsson L, Westrom B, Erlanson-Albertsson C, Albertsson PA. Food Hydrocolloids 25(6): 1618-1626 (2011)
• Modeling Symmetric Macromolecular Structures in Rosetta3. Dimaio F, Leaver-Fay A, Bradley P, Baker D, André I.  PLoS One 6(6):e20450 (2011)
• Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings. Sgourakis NG, Lange OF, DiMaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D. J Am Chem Soc 133: 6288-98 (Apr 2011)
• Chloroplast thylakoid membrane-stabilised emulsions. Rayner M, Ljusberg H, Emek SC, Sellman E, Erlanson-Albertsson C, Albertsson PÅ. J Sci Food Agric 91/2, 315-321 (2011)
• A Leukotriene A4 Hydrolase-Related Aminopeptidase from Yeast Undergoes Induced Fit upon Inhibitor Binding. Helgstrand C, Hasan M, Uysal H, Haeggström JZ & Thunnissen MMGM. J Mol Biol 406, 120–134 (2011)
• tmRNA to the rescue: Structural motives for the salvage of stalled ribosomes. Lindahl M. RNA Biology 7(5): 577-581 (2010)
• Folding catalysis by transient coordination of the Cu ligands of the ALS-associated enzyme SOD1. Leinartaité L, Saraboji K, Nordlund A, Logan DT & Oliveberg M. J. Am. Chem. Soc. 132, 13495–13504 (2010) 
• High resolution structures of the flavoprotein NrdI in oxidised and reduced states: an unusual flavoxodin. Johansson R, Torrents E, Lundin D, Sprenger J, Sahlin M, Sjöberg B.M. & Logan DT. FEBS J. 277, 4265–4277 (2010) 
• Structural basis for adenosylcobalamin activation in AdoCbl-dependent ribonucleotide reductases. Larsson KM, Logan DT & Nordlund P. ACS Chem. Biol. 5, 933–942 (2010)  
• Structural and functional analyses of β-glucosidase 3B from Thermotoga neapolitana: a thermostable three-domain representative of glycoside hydrolase 3. Pozzo T, Linares-Pasten J, Nordberg Karlsson E & Logan DT. J. Mol. Biol. 397, 724–739 (2010)  
• Local Cooperativity in an Amyloidogenic State of Human Lysozyme Observed at Atomic Resolution. Dhulesia A, Cremades N, Kumita JR, Hsu S-T D, Mossuto MF, Dumoulin M, Nietlispach D, Akke M, Salvatella X, Dobson CM. J Am Chem Soc 132, 15580-15588 (2010)
• Protein Flexibility and Conformational Entropy in Ligand Design Targeting the Carbohydrate Recognition Domain of Galectin-3.
  Diehl C, Engström O, Delaine T, Håkansson M, Genheden S, Modig K, Leffler H, Ryde U, Nilsson UJ, Akke M. J Am Chem Soc. 132, 14577-14589 (2010) 
• Wiring of pyranose dehydrogenase with osmium polymers of different redox potentials. Zafar M N, Tasca F, Boland S, Kujawa M, Patel I, Peterbauer C K, Leech D, Gorton L. Bioelectrochem 80: 38-42 (2010) 
• High water mobility on the ice-binding surface of a hyperactive antifreeze protein. K Modig, J Qvist, C B Marshall, P L Davies & B Halle. Chem Phys Phys Chem 12, 10189–10197 (2010)
• Mechanism of 1H-14N cross-relaxation in immobilized proteins. E P Sunde & B Halle. J Magn Reson 203, 257–273 (2010)
• Photolabile ubiquinone analogues for identification and characterization of quinone binding sites in proteins. Pei Z, Gustavsson T, Roth R, Frejd T, Hägerhäll C. Bioorg Med. Chem. 18: 3457-3466 (2010) 
• A cytochrome c- fusion protein domain for convenient detection, quantification and enhanced production of membrane proteins in Escherichia coli - expression and characterization of cytochrome-tagged complex I subunits. Gustavsson T, Trane M, Moparthi V K, Miklovyte E, Moparthi L, Górecki K, Leiding T, Peterson Årsköld S, Hägerhäll C. Protein Science 19:1445-1460 (2010) 
• Structure and dynamics of ribosomal protein L12: an ensemble model based on SAXS and NMR relaxation. Bernado P, Modig K, Grela P, Svergun D, Tchorzewski M, Pons M, Akke M. Biophys J 98: 2374-2382 (2010)
• Starting-condition dependence of order parameters derived from molecular dynamics simulations. Genheden S, Diehl C, Akke M, Ryde U. J Chem Theor Comput 6: 2176-2190 (2010)
• Proton and cation transport activity of the M2 proton channel from influenza A virus. Thom Leiding, Jun Wang, Jonas Martinsson, William F. DeGrado, and Sindra Peterson Årsköld. 
  PNAS Early Edition (Aug 2010)
• ATP-Induced Conformational Dynamics in the AAA+ Motor Unit of Magnesium Chelatase. Lundqvist J, Elmlund H, Wulff RP, Berglund L, Elmlund D, Emanuelsson C, Hebert H, Willows RD, Hansson M, Lindahl M, Al-Karadaghi S. Structure 18: 354-365 (2010). 
• Kinetic behaviour of WT 1’s zinc finger domain in binding tothe alpha-actinin-1 mRNA. Nurmemmedov E, Yengo R, Ladomery M, Thunnissen M. Arch Biochem Biophys 497: 21–27 (2010)
• Retardation of Abeta fibril formation by phospholipid vesicles depends on membrane phase behavior. Hellstrand E, Sparr E, Linse S. Biophys J 98: 2206-2214 (2010).
• Proteomics of plasma membranes from poplar trees reveals tissue distribution of transporters, receptors, and proteins in cell wall formation. Nilsson R, Bernfur K, Gustavsson N, Bygdell J, Wingsle G, Larsson C. Mol Cell Proteomics 9: 368-87 (Feb 2010) 
• Dual effect of amino modified polystyrene particles on Aβ fibrillation. Cabaleiro-Lago C, Lynch I, Quinlan-Pluck F, Dawson K, Linse S. ACS Chem Neurosci, 1:279-287 (2010) 
• Integrated protein array screening and high throughput validation of 70 novel neural calmodulin binding proteins. O’Connell DJ, Bauer MC, O'Brien J, Johnson WM, Divizio CA, O'Kane SL, Berggård T, Merino A, Åkerfeldt KS, Linse S, Cahill DJ. Mol Cell Proteomics 9:1118-1132 (2010)
• Aβ aggregation produces highly reproducible kinetic data and occurs by a two-phase process. Hellstrand E, Bolan B, Walsh DM, Linse S. ACS Chem Neurosci 1:13 -18 (2010) 
• Calcium binding, structural stability and guanylate cyclase activation in GCAP1 variants associated with human cone dystrophy. Dell´Orco D, Behnen P, Linse S,  Koch KW. Cell Mol Life Sci 67:973-984 (2010)
• Inhibition of IAPP and IAPP(20-29) fibrillation by  polymeric nanoparticles. Cabaleiro-Lago C, Lynch I, Dawson KA, Linse S. Langmuir 26:3453-3461 (2010) 
• Thioredoxin targets of the plant chloroplast lumen and their implications for plastid funcrtion. Hal M, Mata-Cabana A, Åkerlund HE, Florencio FJ Schröder WP, Lindahl M & Kieselbach T. Proteomics 10, 987-1001 (2010)
• Post Harvest Improvement of Zeaxanthin Content of Vegetables. M Clausén, S Huang, SC Emek, I Sjöholm & HE Åkerlund. J Food Engin 98: 192-197 (May 2010) 
• DNA Heats Up: Energetics of Genome Ejection from Phage Revealed by Isothermal Titration Calorimetry. M Jeembaeva, B Jönsson, M Castelnovo & A Evilevitch. J Mol Biol 395: 1079-1087 (Feb 2010) 
• A Large Scale Method for Preparation of Plant Thylakoids for Use in Body Weight Regulation. SC Emek, A Szilagyi, HE Åkerlund, PÅ Albertsson, R Köhnke , A Holm, CE Albertsson. Prep Biochem Biotech 40:13-27 (2010) 
• tmRNA.SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes. Cheng K, Ivanova N, Scheres SH, Pavlov MY, Carazo JM, Hebert H, Ehrenberg M, Lindahl M.  J Struct Biol 169(3) 342-348 (2010) 
• Slow internal protein dynamics from water 1H magnetic relaxation dispersion. E P Sunde & B Halle. J Am Chem Soc 131, 18214–18215 (2009)
• The physical basis of model-free analysis of NMR relaxation data from proteins and complex fluids. B Halle. J Chem Phys 131, 224507:1–22 (2009)
• Does the dynamic Stokes shift report on slow protein hydration dynamics? B Halle & L Nilsson. J Phys Chem B 113, 8210-8213 (2009)
• Electrical wiring of live, metabolically enhanced Bacillus subtilis cells with flexible osmium-redox polymers. Coman V, Gustavsson T, Finkelsteinas A, von Wachenfeldt C, Hägerhäll C, Gorton L. J. Am. Chem. Soc 131 (44); 16171-1617 (2009)
• Electrical Communication of cytochrome enhanced Escherichia coli JM109 with Graphite Electrodes. Alferov S, Coman V, Gustavsson T, von Wachenfeldt C, Hägerhäll C, Gorton L. Electrochimica Acta, 54 (22) 4979-4984 (2009)
• Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3 Diehl C, Genheden S, Modig K, Ryde U, Akke M. J Biomol NMR, 45, 157–169 (2009)
• Transcriptional regulation of aquaporins in accessions of Arabidopsis in response to drought stress. E Alexandersson, JÅ Danielson, J Råde, VK Moparthi, M Fontes, P Kjellbom & U Johanson. Plant J (Nov 2009) 
• The physical state of water in bacterial spores. E P Sunde, P Setlow, L Hederstedt & B Halle. Proc Natl Acad Sci USA (Nov 2009).  
• Teilum K., Smith M. H., Schulz E., Christensen L. C., Solomentsev G., Oliveberg M., Akke M. Transient structural distortion of metal-free Cu/Zn superoxide dismutase triggers aberrant oligomerization. Proc Natl Acad Sci 106: 18273-18278 (Oct 2009) 
• Liljas A. Leaps in Translational Elongation. Microscopic and crystallographic studies shed light on key steps in the protein synthesis process in ribosomes. Science. 2009 Oct 15. 
• Elmlund H, Baraznenok V, Linder T, Szilagyi Z, Rofougaran R, Hofer A, Hebert H, Lindahl M, Gustafsson CM. Cryo-EM reveals promoter DNA binding and conformational flexibility of the general transcription factor TFIID. Structure 17, 1442-1452 (2009)
• Elmar Nurmemmedov, Raymond K. Yengo, Hüseyin Uysal, Robert Karlsson, Marjolein M.G.M. Thunnissen. New insights into DNA-binding behavior of Wilms Tumor Protein (WT1) — A dual study. Biophysical Chemistry 145, 116-125 (2009) 
• Lundqvist J, Elmlund D, Heldt D, Deery E, Söderberg CAG, Hansson M, Warren M, Al-Karadaghi S. The AAA(+) motor complex of subunits CobS and CobT of cobaltochelatase visualized by single particle electron microscopy. J Struct Biol. 2009 Sep;167(3):227-34.
• Krintel C, Mörgelin M, Logan DT, Holm C. Phosphorylation of hormone-sensitive lipase by protein kinase A in vitro promotes an increase in its hydrophobic surface area. FEBS J. 276, 4752–62 (2009)
• Nordlund A, Leinartaité L, Saraboji K, Aisenbrey C, Gröbner G, Zetterström P, Danielsson J, Logan DT, Oliveberg M. Functional features cause misfolding of the ALS-provoking enzyme SOD1. Proc. Natl. Acad. Sci. USA 106, 9667–9672 (2009)
• B Halle & L Nilsson, Does the dynamic Stokes shift report on slow protein hydration dynamics? J Phys Chem B 113, 8210-8213 (2009). 
• J Qvist, E Persson, C Mattea & B Halle, Time scales of water dynamics at biological interfaces: peptides, proteins and cells. Faraday Discuss 141, 131-144 (2009). 
• Green fluorescence induced by EF-hand assembly in a split GFP system. S Lindman, I Johansson, E Thulin & S Linse. Protein Sci 18, 1221-1229 (2009)
• Complete High Density Lipoproteins in Nanoparticle Corona. E Hellstrand, I Lynch, A Andersson, T Drakenberg, B Dahlbäck B, KA Dawson, S Linse & T Cedervall. FEBS J 276, 3372-3381 (2009)
• Protein GB1 Folding and Assembly from Structural Elements. MC Bauer, WF Xue & S Linse. Int. J. Mol. Sci. 10, 1552-1566 (2009)
• Role of protein surface charges in monellin sweetness. WF Xue, O Szczepankiewicz, E Thulin, S Linse S & J Carey. Biochim Biophys Acta 1794, 410-20 (2009)
• A facile method for expression and purification of the Alzheimer disease-associated amyloid β-peptide. DM Walsh, E Thulin, A Minuogue, T Gustafsson, E Pang, DB Teplow & S Linse. FEBS J 276, 1266-1281 (2009)
• Chemical and Thermal Unfolding of Glypican-1: Protective Effect of Heparan Sulfate Against Heat-Induced Irreversible Aggregation. G Svensson, S Linse & K Mani. Biochemistry 48, 9994-10004 (2009)
• Muhammad Nadeem Zafar, Federico Tasca, Lo Gorton, Eric V. Patridge, James G. Ferry and Gilbert Noll. Tryptophan Repressor-Binding Proteins from Escherichia coli and Archaeoglobus fulgidus as New Catalysts for 1,4-Dihydronicotinamide Adenine Dinucleotide-Dependent Amperometric Biosensors and Biofuel Cells. Anal Chem. 2009 April; 81(10): 4082-4088.
• Uysal H, Bockermann R, Nandakumar KS, Sehnert B, Bajtner E, Engström A, Serre G, Burkhardt H, Thunnissen MM, Holmdahl R. Structure and pathogenicity of antibodies specific for citrullinated collagen type II in experimental arthritis.J Exp Med. 2009 Feb 16;206(2):449-62. Epub 2009 Feb 9.
• Leiding T, Górecki K, Kjellman T, Vinogradov S, Hägerhäll C, Peterson Årsköld S. Precise detection of pH inside large unilamellar vesicles using membrane-impermeable dendritic porphyrin-based nanoprobes. Analytical Biochemistry 2009. Epub Feb 13.
• Uysal H, Bockermann R, Nandakumar KS, Sehnert B, Bajtner E, Engström A, Serre G, Burkhardt H, Thunnissen MM, Holmdahl R. J. Structure and pathogenicity of antibodies specific for citrullinated collagen type II in experimental arthritis. Exp. Med. 2009. (Epub ahead of print)
• M Davidovic, C Mattea, J Qvist & B Halle, Protein cold denaturation as seen from the solvent. J Am Chem Soc 131, 1025-1036 (2009). 

• Print version