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34. Regenthal P, Hansen JS, André I, Lindkvist-Petersson K. Thermal stability and structural changes in bacterial toxins responsible for food poisoning. PLoS One. 2017 Feb 16;12(2):e0172445.

33. Boelt SG, Norn C, Rasmussen MI, André I, Čiplys E, Slibinskas R, Houen G, Højrup P. Mapping the Ca(2+) induced structural change in calreticulin. J Proteomics. 2016 Jun 16;142:138-48.

32. Lizatović R, Aurelius O, Stenstrom O, Drakenberg T, Akke M, Logan DT and André I. A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch. Structure 2016; doi: 10.1016/j.str.2016.03.027.

31. Norn CN and André I. Computational design of protein self-assembly. Current Opinion in Structural Biology 2016; pp 39-45. doi:10.1016/

30. Potrzebowski W, André I. "Automated determination of fibrillar structures by simultaneous model building and fiber diffraction refinement". Nat Methods. 2015; doi: 10.1038/nmeth.3399

29. Rämisch S, Lizatović R, André I. Automated de novo phasing and model building of coiled-coil proteins. Acta Cryst D. 2015;D71.

28. Kaltofen S, Li C, Huang PS, Serpell LC, Barth A, André I. Computational de novo design of a self-assembling Peptide with predefined structure. Journal of molecular biology. 2015;427:550-62.

27. Rämisch S, Weiniger U, Martinsson J, Akke M and Andre I "Computational design of Leucine-Rich Repeat proteins with a defined geometry" Proc Natl Acad Sci, 2014, pii: 201413638.

26. Rämisch S, Lizatovic and Andre I. "Exploring alternate states and oligomerization preferences of coiled-coils by de novo structure modeling" Proteins, 2014. doi: 10.1002/prot.24729 

25. André I, Corn J. "The RosettaCon 2012 Special Collection: Code Writ on Water, Documentation Writ in Stone." PLoS One. 2013 Sep 26;8(9):e73775. doi: 10.1371/journal.pone.0073775.

24. King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. "Computational design of self-assembling protein nanomaterials with atomic level accuracy". (2012) Science. Jun 1;336(6085):1171-4. 

23. Meisner J, Maehigashi T, Andre I, Dunham CM and Moran, Jr CP. “Structure of the Basal Components of a Novel Bacterial Transporter”. (2012) Proc Natl Acad Sci U S A. Apr 3;109(14):5446-51.  

22. Elkin M, Andre I and Lukatsky, D. Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions. Journal of Statistical Physics (2012), 10.1007/s10955-012-0421-1.

21. Dimaio F, Leaver-Fay A, Bradley P, Baker D, André I. Modeling Symmetric Macromolecular Structures in Rosetta3. PLoS One. 2011;6(6):e20450.  

20. Sgourakis NG, Lange OF, DiMaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D. Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings. J Am Chem Soc. 2011 Apr 27;133(16):6288-98.

19. Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping. J Mol Biol. Jan 14;405(2):607-18.

18. Sanowar S, Singh P, Pfuetzner RA, Andre I, Zheng H, Spreter T, Strynadka NC, Baker D, Goodlett DR and Miller S.      Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System. MBio. 2010 Aug 3;1(3). pii: e00158-10.

17. Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Rosetta in CAPRI rounds 13-19. Proteins. 2010 Nov 15;78(15):3212-8.

16. Das, R. Andre, I., ,Shen Y., Wu, Y.,Lemak,A., Bansal S., Arrowsmith, C.H., Szyperski, T.  and Baker, D. (2009). Simultaneous prediction of protein folding and docking at high resolution. Proc Natl Acad Sci U S A 105.

15. Spreter, T., Yip, C., Sanowar, S., André , I., Kimbrough, T., Vuckovic, M., Deng, W., Finlay, B., Baker, D., Miller , S., and Strynadka, N. (2009) A conserved structural motif mediates formation of the inner and outer membrane rings in the Type III Secretion System. Nature Structural and Molecular Biology, 16(5):468-76.

14. Andre, I., Strauss, C. E., Kaplan, D. B., Bradley, P., and Baker, D. (2008) Emergence of symmetry in homooligomeric biological assemblies, Proc Natl Acad Sci U S A 105, 16148-16152.

13. Sawaya, M. R., Wojtowicz, W. M., Andre, I., Qian, B., Wu, W., Baker, D., Eisenberg, D., and Zipursky, S. L. (2008) A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms, Cell 134, 1007-1018.

12. Wojtowicz, W. M., Wu, W., Andre, I., Qian, B., Baker, D., and Zipursky, S. L. (2007) A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains, Cell 130, 1134-1145.

11. Wang, C., Schueler-Furman, O., Andre, I., London, N., Fleishman, S. J., Bradley, P., Qian, B., and Baker, D. (2007) RosettaDock in CAPRI rounds 6-12, Proteins 69, 758-763.

10. Lindman, S., Linse, S., Mulder, F. A., and Andre, I. (2007) pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability, Biophys J 92, 257-266.

9. Das, R., Qian, B., Raman, S., Vernon, R., Thompson, J., Bradley, P., Khare, S., Tyka, M. D., Bhat, D., Chivian, D., Kim, D. E., Sheffler, W. H., Malmstrom, L., Wollacott, A. M., Wang, C., Andre, I., and Baker, D. (2007) Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home, Proteins 69 Suppl 8, 118-128.

8. Andre, I., Linse, S., and Mulder, F. A. (2007) Residue-specific pKa determination of lysine and arginine side chains by indirect 15N and 13C NMR spectroscopy: application to apo calmodulin, J Am Chem Soc 129, 15805-15813.

7. Andre, I., Bradley, P., Wang, C., and Baker, D. (2007) Prediction of the structure of symmetrical protein assemblies, Proc Natl Acad Sci U S A 104, 17656-17661.

6. Lindman, S., Linse, S., Mulder, F. A., and Andre, I. (2006) Electrostatic contributions to residue-specific protonation equilibria and proton binding capacitance for a small protein, Biochemistry 45, 13993-14002.

5. Andre, I., Persson, J., Blom, A. M., Nilsson, H., Drakenberg, T., Lindahl, G., and Linse, S. (2006) Streptococcal M protein: structural studies of the hypervariable region, free and bound to human C4BP, Biochemistry 45, 4559-4568.

4. Andre, I., Kesvatera, T., Jonsson, B., and Linse, S. (2006) Salt enhances calmodulin-target interaction, Biophys J 90, 2903-2910.

3. Cedervall, T., Andre, I., Selah, C., Robblee, J. P., Krecioch, P. C., Fairman, R., Linse, S., and Akerfeldt, K. S. (2005) Calbindin D28k EF-hand ligand binding and oligomerization: four high-affinity sites--three modes of action, Biochemistry 44, 13522-13532.

2. Andre, I., Kesvatera, T., Jonsson, B., Akerfeldt, K. S., and Linse, S. (2004) The role of electrostatic interactions in calmodulin-peptide complex formation, Biophys J 87, 1929-1938.

1. Andre, I., and Linse, S. (2002) Measurement of Ca2+-binding constants of proteins and presentation of the CaLigator software, Anal Biochem 305, 195-205.

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